Bioinformatics Algorithms Design and Implementation in Python 1st Edition by Miguel Rocha, Pedro G Ferreira ISBN 9780128125205 0128125209

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Product details:

ISBN 10:  0128125209

ISBN 13: 9780128125205

Author:  Miguel Rocha, Pedro G. Ferreira

Bioinformatics Algorithms: Design and Implementation in Python provides a comprehensive book on many of the most important bioinformatics problems, putting forward the best algorithms and showing how to implement them. The book focuses on the use of the Python programming language and its algorithms, which is quickly becoming the most popular language in the bioinformatics field. Readers will find the tools they need to improve their knowledge and skills with regard to algorithm development and implementation, and will also uncover prototypes of bioinformatics applications that demonstrate the main principles underlying real world applications.

• Presents an ideal text for bioinformatics students with little to no knowledge of computer programming
• Based on over 12 years of pedagogical materials used by the authors in their own classrooms
• Features a companion website with downloadable codes and runnable examples (such as using Jupyter Notebooks) and exercises relating to the book

Table of contents: 

Part I: Bioinformatics Basics

1.Introduction

2.Relevant Biological Concepts

3.Algorithms and Python: Introduction

4.Optimization: Basic Concepts and Algorithms

Part II: Sequence Analysis Algorithms

5. Basic Processing of DNA Sequences: Transcription and Translation

6. Finding Patterns in Sequences

7. Pairwise Sequence Alignment

8. Searching Similar Sequences in Databases

9. Multiple Sequence Alignment

10. Phylogenetic Analysis

11. Motif Discovery

12. Hidden Markov Models

13. Stochastic Algorithms

Part III: Graph and Large-Scale Sequencing Data Processing

14. Graphs

15. Biological Networks

16. Assembling Reads into Genomes

17. Matching Reads to Reference Sequences

Part IV: Conclusions

18. Further Reading and Resources

19. Final Words

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Tags: Miguel Rocha, Pedro G Ferreira, Bioinformatics Algorithms, Design, Implementation, Python