Computational Methods in Systems Biology 16th International Conference CMSB 2018 Brno Czech Republic September 12 14 2018 Proceedings Milan Češka

Regular Papers

Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli

Deep Abstractions of Chemical Reaction Networks

Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models

Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data

Characterization of the Experimentally Observed Clustering of VEGF Receptors

Synthesis for Vesicle Traffic Systems

Formal Analysis of Network Motifs

Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation

Stochastic Rate Parameter Inference Using the Cross-Entropy Method

Experimental Biological Protocols with Formal Semantics

Robust Data-Driven Control of Artificial Pancreas Systems Using Neural Networks

Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks

A Trace Query Language for Rule-Based Models

Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data

Composable Rate-Independent Computation in Continuous Chemical Reaction Networks

Tool Papers

ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks

KaSa: A Static Analyzer for Kappa

On Robustness Computation and Optimization in BIOCHAM-4

LNA++: Linear Noise Approximation with First and Second Order Sensitivities

Poster Abstracts

Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian Inference

On the Full Control of Boolean Networks

Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis