Plant Genomics Databases Methods and Protocols 1st Edition Aalt D.J Van Dijk 149398263X‎ 9781493982639

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Product details:

• ISBN-10 ‏ : ‎ 149398263X
• ISBN-13 ‏ : ‎ 978-1493982639
• Author: Aalt D.J Van Dijk

This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls.

Table of contents:

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data
PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data
Plant Genome DataBase Japan (PGDBj)
FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes
Mining Plant Genomic and Genetic Data Using the GnpIS Information System
The Bio-Analytic Resource for Plant Biology
The Evolution of Soybean Knowledge Base (SoyKB)
Using TropGeneDB: A Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops
Species-Specific Genome Sequence Databases: A Practical Review
A Guide to the PLAZA 3.0 Plant Comparative Genomic Database
Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0
PlaNet: Comparative Co-Expression Network Analyses for Plants
Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species
Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study
CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses
Plant Genome Duplication Database
Variant Effect Prediction Analysis Using Resources Available at Gramene Database
Plant Promoter Database (PPDB)
Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes

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