Python for Bioinformatics 2nd Edition by Sebastian Bassi ISBN 9781138035263 1138035262

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Product details:

ISBN 10:  1138035262

ISBN 13: 9781138035263

Author:  Sebastian Bassi

In today’s data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language.

This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development.

Table of contents: 

1. Introduction

2. First Steps with Python

3. Basic Programming: Data Types

4. Programming: Flow Control

5. Handling Files

6. Code Modularizing

7. Error Handling

8. Introduction to Object Orienting Programming

9. Introduction to Biopython

10. Web Applications

11. XML

12. Python and Databases

13. Regular Expressions

14. Graphics in Python

15. Sequence Manipulation in Batch

16. Web Application for Filtering Vector Contamination

17. Searching for PCR Primers Using Primer3

18. Calculating Melting Temperature from a Set of Primers

19. Filtering Out Specific Fields from a GenBank File

20. Inferring Splicing Sites

21. Web Server for Multiple Alignment

22. Drawing Marker Positions Using Data Stored in a Database

23. DNA Mutations with Restrictions

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Tags: Sebastian Bassi, Python, Bioinformatics